Abstract:Eicosapentaenoic acid (EPA) is an ω-3 long-chain polyunsaturated fatty acid valued for its diverse physiological activities. The production of EPA by extraction from marine fish oils is becoming increasingly unsustainable due to depleting fish stocks and rising environmental pollution. Consequently, alternative sources for EPA production are necessary. In this study, we constructed a Pichia pastoris cell factory for heterologous production of EPA. To enhance the accumulation of total fatty acids (TFAs) in the engineered strain, we knocked out the downstream metabolic pathway of fatty acids and the competitive pathway. Simultaneously, the expression of C16/18 elongase, C18/20 elongase, and desaturase were strengthened. With glucose as the carbon source, the engineered strain accumulated 677.34 mg/L TFAs and 60.81 mg/L EPA. The three key enzymes were further overexpressed to increase the EPA production, which reached a titer of 68.89 mg/L. Furthermore, we replaced the glucose promoter PGAPof three key enzymes in the EPA synthesis pathway with the promoter PAOX1 of the alcohol oxidase AOX1 to explore the methanol-induced EPA synthesis, which further increased the EPA titer to 75.21 mg/L. This study lays a foundation for the biosynthesis of long-chain polyunsaturated fatty acids in P. pastoris and the construction of P. pastoris cell factories for producing EPA with methanol, a one-carbon resource.