Abstract:This study aimed to optimize the hydrolysis conditions of agarose by β-agarase Y3R1 and to investigate the prebiotic effects of its product, neoagarooligosaccharides, on gut microbiota. Using reducing sugar yield as the evaluation index, the enzymatic hydrolysis process of β-agarase Y3R1 from Catenovellum agarivorans was optimized. The content of reducing sugar and total sugar generated during the reaction were determined via the 3,5-dinitrosalicylic acid (DNS) method and the phenol-sulfuric acid method, respectively, and the average degree of polymerization (DP) of the enzymatic hydrolysis products was calculated. Through response surface methodology, the conditions for β-agarase hydrolysis of agarose were optimized as follows: a 50 mL reaction system, an agarose (substrate) concentration of 41.9 mg/mL, an enzyme dosage of 7.5 U, and reaction conducted at 65 ℃ and pH 6.5 for 120 min. The products of agarose hydrolysis by β-agarase Y3R1 were identified by MS and HPLC as neoagarobiose, neoagarotetraose, and neoagarohexaose, with the peak area ratio of 4%:77%:17%. Furthermore, an in vitro fermentation model was employed to investigate the regulatory effects of neoagaro-oligosaccharides (NAOS) on intestinal microbiota through alpha and beta diversity analyses, comparison of intestinal microbiota structure at the phylum and genus levels, LEfSe, and short-chain fatty acid (SCFA) content determination. The results indicated that NAOS primarily modulated the intestinal microbiota structure by promoting the growth of beneficial bacteria such as Bacteroides and Limosilactobacillus, while also exerting prebiotic effects through changes in levels of SCFAs, especially acetic acid, propionic acid, and butyric acid. The above findings confirm the promising prebiotic potential of NAOS and provide a theoretical basis for its application in functional foods.